Awesome List Updates on Sep 05, 2020

7 awesome lists updated today.

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1. Awesome Django

Third-Party Packages / Configuration

• django-configurations (⭐1.1k) - eases Django project configuration by relying on the composability of Python classes and following principles of the twelve-factor app.

2. Awesome Biological Visualizations

Cancer

• cBioPortal for Cancer Genomics - Visualization, analysis and download of large-scale cancer genomics data sets.

• Oncoscape - An integrated suite of analysis tools for users to explore hypotheses related to molecular and clinical data.

Genomics

• PLACNETw - A graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets.

• PhyD3 - A phylogenetic tree viewer.

• Archaeopteryx - Visualization, analysis, and editing of phylogenetic trees.

3D Genomics

• TADkit - 3D genome browser and TADbit front-end.

Proteomics

• COSMIC-3D - A platform for understanding cancer mutations in the context of 3D protein structure.

Spatial transcriptomics

• Vitessce - Visual integration tool for exploration of spatial single-cell experiment data.

• Brain mRNA Isoform Atlas - Visualize cell type signatures of alternative splicing in postnatal development.

• AlzMap - Spatial transcriptomics in Alzheimer's disease.

• Loom Viewer - Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format.

• TissUUmaps - Interactive visualization of large-scale spatial gene expression and tissue morphology data.

• Giotto Viewer - A web-based visualization package for spatial transcriptomic data.

(Non-spatial) Transcriptomics

• cellxgene - An interactive explorer for single-cell transcriptomics data.

• UCSC Cell Browser - An interactive viewer for single-cell expression.

• ASAP - A collaborative portal to analyze single-cell transcriptomics data.

• Mouse Brain Atlas - Atlas of cell types from the Linnarsson Lab.

• Broad Institute Single Cell Portal - Reducing barriers and accelerating single-cell research.

• Allen Brain Map - Transcriptomics Explorer - Atlas of human and mouse transcriptomic cell types.

• Single Cell VR - Interactive visualization of single-cell data in virtual reality.

• SPRING - A tool for uncovering high-dimensional structure in single-cell gene expression data.

• START - Shiny Transcriptome Analysis Resource Tool allows users to visualize RNA-seq data starting with count data.

• iSEE - The Interactive SummarizedExperiment Explorer.

Microscopy / Gene expression matrices

• IONpath MIBItracker - Slide and image data.

• Avivator - A lightweight "batteries-included" WebGL viewer for remote imaging data in Bio-Formats Zarr or OME-TIFF format.

Connectomics / Gene expression matrices

• Allen Mouse Brain Connectivity Atlas - A high-resolution map of neural connections in the mouse brain.

• FlyWire - A human-AI collaboration to map the fly connectome.

Metabolomics / Gene expression matrices

• Metaspace - A platform for metabolite annotation of imaging mass spectrometry data.

Medicine / Gene expression matrices

• Snake Oil Supplements - Scientific evidence for popular health supplements.

• SieveSifter - Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.

3. Awesome Flutter

Utilities / Game Engine resources

• Fontify (⭐102) - CLI tool to convert SVG icons to OTF font and generate Flutter-compatible class by Igor Kharakhordin

4. Awesome Nodejs

Packages / Authentication

• Grant (⭐4.1k) - OAuth providers for Express, Koa, Hapi, Fastify, AWS Lambda, Azure, Google Cloud, Vercel, and many more.

5. Awesome Selfhosted

Software / Software Development - Project Management

• SCM Manager - The easiest way to share and manage your Git, Mercurial and Subversion repositories over http. (Source Code (⭐134)) BSD-3-Clause Java/deb/Docker/K8S

Software / Task Management & To-do Lists

• Wekan - Open-source Trello-like kanban. (Source Code (⭐19k)) MIT Nodejs

6. Awesome Internships

Practice platforms

• LeetCode - Practice your coding skills by solving more than 800+ questions.

• HackerRank - Companies host coding challenges there.

7. Awesome Actions

GitHub Tools and Management / Docker Container Actions

• Herald Rules for GitHub: Add Subscribers, Assignees, Labels, and More to Your PR (⭐45)

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