Awesome List Updates on Nov 22, 2019

8 awesome lists updated today.

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1. Awesome Bioie

Research Overviews / Pre-LLM Overviews

• Capturing the Patient's Perspective: a Review of Advances in Natural Language Processing of Health-Related Text - A 2017 review of natural language processing methods applied to information extraction in health records and social media text. An important note from this review: "One of the main challenges in the field is the availability of data that can be shared and which can be used by the community to push the development of methods based on comparable and reproducible studies".

Groups Active in the Field / Pre-LLM Overviews

• Brown Center for Biomedical Informatics - Based at Brown University and directed by Dr. Neil Sarkar, whose research group works on topics in clinical NLP and IE.

• Center for Computational Pharmacology NLP Group - based at University of Colorado, Denver and led by Larry Hunter - see their GitHub repos here.

• Groups at U.S. National Institutes of Health (NIH) / National Library of Medicine (NLM):
  • Demner-Fushman group at NLM
  • BioNLP group at NCBI - Develops improvements to biomedical literature search and curation (e.g., through PubMed), led by Dr. Zhiyong Lu.

• JensenLab - Based at the Novo Nordisk Foundation Center for Protein Research at the University of Copenhagen, Denmark.

• National Centre for Text Mining (NaCTeM) - Based at the University of Manchester and led by Prof. Sophia Ananiadou, NaCTeM is concerned with text mining in general but has a particular focus on biomedical applications.

• Mayo Clinic's clinical natural language processing program - Several groups at Mayo Clinic have made major contributions to BioIE (for example, the Apache cTAKES platform) over the past 20 years.

• Monarch Initiative - A joint effort between groups at Oregon State University, Oregon Health & Science University, Lawrence Berkeley National Lab, The Jackson Laboratory, and several others, seeking to "integrate biological information using semantics, and present it in a novel way, leveraging phenotypes to bridge the knowledge gap".

• TurkuNLP - Based at the University of Turku and concerned with NLP in general with a focus on BioNLP and clinical applications.

• UTHealth Houston Biomedical Natural Language Processing Lab - Based in the University of Texas Health Science Center at Houston, School of Biomedical Informatics and led by Dr. Hua Xu.

• VCU Natural Language Processing Lab - Based at Virginia Commonwealth University and led by Dr. Bridget McInnes.

• Zaklab - Group led by Dr. Isaac Kohane at Harvard Medical School's Department of Biomedical Informatics (Dr. Kohane is also a steward of the n2c2 (formerly i2b2) datasets - see Datasets below).

• Columbia University Department of Biomedical Informatics - Led by Drs. George Hripcsak and Noémie Elhadad.

2. Awesome Home Assistant

Dashboards / Custom Cards

• RGB Light Card (⭐323) - Colorful buttons to control your RGB Lights.

3. Awesome Pascal

Graphic

• Clipper. [Delphi] Library performs line & polygon clipping - intersection, union, difference & exclusive-or, and line & polygon offsetting

Database

• iORM (⭐40). [Delphi] Delphi ORM interface based useful to develop desktop and mobile application.

System

• ezthreads (⭐62). [FPC] simple to use threading library

• AsyncCalls (⭐98). [Delphi] Asynchronous function call framework

Other non-visual

• Charset Enigma (⭐9). [Delphi] Delphi charset detector Community Edition

4. Awesome Prometheus

High Availability / Miscellaneous

• Cortex (⭐5.4k) - Horizontally scalable, highly available, multi-tenant, long-term Prometheus.

• Thanos (⭐13k) - Highly available Prometheus setup with long term storage capabilities.

5. Awesome Geek Podcasts

In French

• IFTTD – If This Then Dev - Weekly french podcast interviewing experts in various tech domains (AI, blockchain, security, devops,...). Hosted by Bruno Soulez.

6. Awesome List

Programming Languages

• Vala (⭐158) - Programming language designed to take full advantage of the GLib and GNOME ecosystems, while preserving the speed of C code.

Business

• Wardley Maps (⭐645) - Provides high situational awareness to help improve strategic planning and decision making.

Miscellaneous

• Earth (⭐1.3k) - Find ways to resolve the climate crisis.

7. Awesome Web Security

Crypto

• Applied Crypto Hardening - Written by The bettercrypto.org Team.

NoSQL Injection

• GraphQL NoSQL Injection Through JSON Types - Written by Pete.

SSRF

• AWS takeover through SSRF in JavaScript - Written by Gwen.

• All you need to know about SSRF and how may we write tools to do auto-detect - Written by @Auxy233.

Others

• How I hacked Google’s bug tracking system itself for $15,600 in bounties - Written by @alex.birsan.

Backend (core of Browser implementation, and often refers to C or C++ part)

• Three roads lead to Rome - Written by @holynop.

Database

• Exploit Database - ultimate archive of Exploits, Shellcode, and Security Papers by Offensive Security.

Miscellaneous / Server-Side Request Forgery

• The bug bounty program that changed my life - Written by Gwen.

8. Awesome Mac

Developer Tools / Virtualization

• VMware Fusion - Powerful, commercial VM developed by VMware.

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• Next: Nov 21, 2019